CRISPRone

CRISPRone report for GCA_003631455.1_ASM363145v1

♦ Seq 1: RAAZ01000026.1 Pseudomonas aeruginosa strain HUM-334 NODE_105_length_6586_cov_13.7252_ID_209, whole genome shotgun sequence

⇒Summary: seq-len = 6586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5627-6314 bp Zoom in on locus 1 x12 CRISPR array Location: 5627-6314 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 5627-6314 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5627-6314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAZ01000018.1 Pseudomonas aeruginosa strain HUM-334 NODE_14_length_114595_cov_14.971_ID_27, whole genome shotgun sequence

⇒Summary: seq-len = 114595 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32339-42924 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 32339-33883 bp Gene: unk Type: unknown Location: 34967-35146 bp Gene: pfam00078:RT Type: other Location: 35878-37146 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 42055-42924 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAAZ01000007.1 Pseudomonas aeruginosa strain HUM-334 NODE_49_length_48174_cov_9.34109_ID_101, whole genome shotgun sequence

⇒Summary: seq-len = 48174 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37519-47902 bp Zoom in on locus 1 x11 x20 CRISPR array Location: 37519-38147 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 37519-38147 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 38330-38893 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38897-39925 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39936-40919 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40906-42210 bp Gene: COG1203:cas3 Type: Type-I Location: 42268-45498 bp Gene: cd09718:cas1 Type: universal Location: 45495-46469 bp CRISPR array Location: 46734-47902 bp Num of repeats: 20 Spacers: s11-s29 CRISPR array Location: 46734-47902 bp Num of repeats: 20 Spacers: s11-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37519-38147 bp]: array | spacers
           [Locus range 46734-47902 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)