CRISPRone

CRISPRone report for GCA_003631495.1_ASM363149v1

♦ Seq 1: RAAY01000008.1 Pseudomonas aeruginosa strain VET-70 PA2_G8_NODE_185_length_11346_cov_22.5487_ID_369, whole genome shotgun sequence

⇒Summary: seq-len = 11346 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10953-11313 bp Zoom in on locus 1 x6 CRISPR array Location: 10953-11313 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10953-11313 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10953-11313 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAY01000184.1 Pseudomonas aeruginosa strain VET-70 PA2_G8_NODE_227_length_8510_cov_16.3395_ID_453, whole genome shotgun sequence

⇒Summary: seq-len = 8510 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-8170 bp Zoom in on locus 1 x7 Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2-628 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 639-1622 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1609-2910 bp Gene: COG1203:cas3 Type: Type-I Location: 3321-6551 bp Gene: cd09718:cas1 Type: universal Location: 6548-7522 bp CRISPR array Location: 7783-8170 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7783-8170 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7783-8170 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAAY01000154.1 Pseudomonas aeruginosa strain VET-70 PA2_G8_NODE_193_length_10750_cov_18.7554_ID_385, whole genome shotgun sequence

⇒Summary: seq-len = 10750 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40-10064 bp Zoom in on locus 1 x3 x2 x8 CRISPR array Location: 40-190 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 40-190 bp Num of repeats: 3 Spacers: s1-s2 Gene: pfam09707:cas2 Type: universal Location: 255-554 bp Gene: cd09719:cas1 Type: universal Location: 551-1441 bp Gene: pfam08798:cas6e Type: other Location: 1468-2007 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 2054-2716 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2718-3860 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3870-4400 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4397-5965 bp Gene: cd09641:cas3HD Type: Type-I Location: 5968-8649 bp CRISPR array Location: 9424-9513 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 9424-9513 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 9608-10064 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 9608-10064 bp Num of repeats: 8 Spacers: s4-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40-190 bp]: array | spacers
           [Locus range 9424-9513 bp]: array | spacers
           [Locus range 9608-10064 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RAAY01000186.1 Pseudomonas aeruginosa strain VET-70 PA2_G8_NODE_124_length_17806_cov_18.2559_ID_247, whole genome shotgun sequence

⇒Summary: seq-len = 17806 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16838-17465 bp Zoom in on locus 1 x11 CRISPR array Location: 16838-17465 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16838-17465 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16838-17465 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RAAY01000116.1 Pseudomonas aeruginosa strain VET-70 PA2_G8_NODE_145_length_14627_cov_18.5681_ID_289, whole genome shotgun sequence

⇒Summary: seq-len = 14627 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13796-14618 bp Zoom in on locus 1 x14 CRISPR array Location: 13796-14618 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 13796-14618 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13796-14618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RAAY01000230.1 Pseudomonas aeruginosa strain VET-70 PA2_G8_NODE_99_length_20613_cov_24.6634_ID_197, whole genome shotgun sequence

⇒Summary: seq-len = 20613 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13-9147 bp Zoom in on locus 1 x21 CRISPR array Location: 13-1370 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 13-1370 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 1552-1842 bp Gene: cd09721:cas1 Type: universal Location: 1852-2892 bp Gene: pfam01930:cas4 Type: Type-I Location: 2896-3528 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 3547-4416 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 4428-6191 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 6188-6862 bp Gene: cd09641:cas3HD Type: Type-I Location: 6913-9147 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 13-1370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RAAY01000262.1 Pseudomonas aeruginosa strain VET-70 PA2_G8_NODE_271_length_6385_cov_18.2505_ID_541, whole genome shotgun sequence

⇒Summary: seq-len = 6385 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4589-6384 bp Zoom in on locus 1 x10 CRISPR array Location: 4589-5158 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4589-5158 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 5341-5904 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5908-6384 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4589-5158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)