CRISPRone

CRISPRone report for GCA_003631615.1_ASM363161v1

♦ Seq 1: RAAR01000144.1 Pseudomonas aeruginosa strain HUM-240 NODE_36_length_63013_cov_14.7488_ID_71, whole genome shotgun sequence

⇒Summary: seq-len = 63013 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-679 bp Zoom in on locus 1 x10 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAR01000048.1 Pseudomonas aeruginosa strain HUM-240 NODE_25_length_98758_cov_14.9636_ID_49, whole genome shotgun sequence

⇒Summary: seq-len = 98758 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87849-98649 bp Zoom in on locus 1 x14 x24 CRISPR array Location: 87849-88657 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 87849-88657 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 88841-89404 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 89408-90436 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 90447-91430 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 91417-92721 bp Gene: COG1203:cas3 Type: Type-I Location: 92779-96009 bp Gene: cd09718:cas1 Type: universal Location: 96006-96980 bp CRISPR array Location: 97241-98649 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 97241-98649 bp Num of repeats: 24 Spacers: s14-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87849-88657 bp]: array | spacers
           [Locus range 97241-98649 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)