CRISPRone

CRISPRone report for GCA_003631635.1_ASM363163v1

♦ Seq 1: RAAP01000035.1 Pseudomonas aeruginosa strain HUM-238 PA3_C2_NODE_9_length_208256_cov_24.3683_ID_17, whole genome shotgun sequence

⇒Summary: seq-len = 208256 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207554-208122 bp Zoom in on locus 1 x10 CRISPR array Location: 207554-208122 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 207554-208122 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207554-208122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAP01000012.1 Pseudomonas aeruginosa strain HUM-238 PA3_C2_NODE_37_length_49141_cov_21.5065_ID_73, whole genome shotgun sequence

⇒Summary: seq-len = 49141 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-10932 bp Zoom in on locus 1 x24 x14 CRISPR array Location: 132-1541 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 132-1541 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 1801-2775 bp Gene: COG1203:cas3 Type: Type-I Location: 2772-6002 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6060-7364 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7351-8334 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8345-9373 bp Gene: cd09739:cas6f Type: other Location: 9377-9940 bp CRISPR array Location: 10125-10932 bp Num of repeats: 14 Spacers: s24-s36 CRISPR array Location: 10125-10932 bp Num of repeats: 14 Spacers: s24-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132-1541 bp]: array | spacers
           [Locus range 10125-10932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)