CRISPRone

CRISPRone report for GCA_003631685.1_ASM363168v1

♦ Seq 1: RAAM01000037.1 Pseudomonas aeruginosa strain HUM-275-D2 PA2_C6_NODE_19_length_55100_cov_28.4752_ID_37, whole genome shotgun sequence

⇒Summary: seq-len = 55100 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43890-54690 bp Zoom in on locus 1 x14 x24 CRISPR array Location: 43890-44698 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 43890-44698 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 44882-45445 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 45449-46477 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 46488-47471 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 47458-48762 bp Gene: COG1203:cas3 Type: Type-I Location: 48820-52050 bp Gene: cd09718:cas1 Type: universal Location: 52047-53021 bp CRISPR array Location: 53282-54690 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 53282-54690 bp Num of repeats: 24 Spacers: s14-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 43890-44698 bp]: array | spacers
           [Locus range 53282-54690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAM01000453.1 Pseudomonas aeruginosa strain HUM-275-D2 PA2_C6_NODE_245_length_7520_cov_35.4814_ID_489, whole genome shotgun sequence

⇒Summary: seq-len = 7520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6540-7108 bp Zoom in on locus 1 x10 CRISPR array Location: 6540-7108 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 6540-7108 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6540-7108 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)