CRISPRone

CRISPRone report for GCA_003631695.1_ASM363169v1

♦ Seq 1: RAAK01000055.1 Pseudomonas aeruginosa strain HUM-323-D2 PA2_H9_NODE_5_length_74665_cov_42.8146_ID_9, whole genome shotgun sequence

⇒Summary: seq-len = 74665 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25656-36456 bp Zoom in on locus 1 x24 x14 CRISPR array Location: 25656-27065 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 25656-27065 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 27325-28299 bp Gene: COG1203:cas3 Type: Type-I Location: 28296-31526 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 31584-32888 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 32875-33858 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 33869-34897 bp Gene: cd09739:cas6f Type: other Location: 34901-35464 bp CRISPR array Location: 35649-36456 bp Num of repeats: 14 Spacers: s24-s36 CRISPR array Location: 35649-36456 bp Num of repeats: 14 Spacers: s24-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25656-27065 bp]: array | spacers
           [Locus range 35649-36456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAK01000310.1 Pseudomonas aeruginosa strain HUM-323-D2 PA2_H9_NODE_355_length_5004_cov_50.3422_ID_709, whole genome shotgun sequence

⇒Summary: seq-len = 5004 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4305-4873 bp Zoom in on locus 1 x10 CRISPR array Location: 4305-4873 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4305-4873 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4305-4873 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)