CRISPRone

CRISPRone report for GCA_003631735.1_ASM363173v1

♦ Seq 1: RAAI01000103.1 Pseudomonas aeruginosa strain HUM-320-D1 PA3_F10_NODE_43_length_49141_cov_29.4923_ID_85, whole genome shotgun sequence

⇒Summary: seq-len = 49141 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38210-49010 bp Zoom in on locus 1 x14 x24 CRISPR array Location: 38210-39018 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38210-39018 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39202-39765 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39769-40797 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40808-41791 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41778-43082 bp Gene: COG1203:cas3 Type: Type-I Location: 43140-46370 bp Gene: cd09718:cas1 Type: universal Location: 46367-47341 bp CRISPR array Location: 47602-49010 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 47602-49010 bp Num of repeats: 24 Spacers: s14-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38210-39018 bp]: array | spacers
           [Locus range 47602-49010 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAI01000115.1 Pseudomonas aeruginosa strain HUM-320-D1 PA3_F10_NODE_13_length_166393_cov_34.2145_ID_25, whole genome shotgun sequence

⇒Summary: seq-len = 166393 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165694-166262 bp Zoom in on locus 1 x10 CRISPR array Location: 165694-166262 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 165694-166262 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 165694-166262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)