CRISPRone

CRISPRone report for GCA_003631785.1_ASM363178v1

♦ Seq 1: RAAB01000191.1 Pseudomonas aeruginosa strain HUM-12-D2 NODE_49_length_41199_cov_38.5827_ID_97, whole genome shotgun sequence

⇒Summary: seq-len = 41199 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30268-41068 bp Zoom in on locus 1 x14 x24 CRISPR array Location: 30268-31076 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 30268-31076 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 31260-31823 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 31827-32855 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 32866-33849 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 33836-35140 bp Gene: COG1203:cas3 Type: Type-I Location: 35198-38428 bp Gene: cd09718:cas1 Type: universal Location: 38425-39399 bp CRISPR array Location: 39660-41068 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 39660-41068 bp Num of repeats: 24 Spacers: s14-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30268-31076 bp]: array | spacers
           [Locus range 39660-41068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAB01000138.1 Pseudomonas aeruginosa strain HUM-12-D2 NODE_20_length_111806_cov_48.1512_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 111751 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111052-111620 bp Zoom in on locus 1 x10 CRISPR array Location: 111052-111620 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 111052-111620 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111052-111620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)