CRISPRone

CRISPRone report for GCA_003631815.1_ASM363181v1

♦ Seq 1: RAAD01000178.1 Pseudomonas aeruginosa strain HUM-311-D2 PA2_A6_NODE_40_length_36010_cov_21.1562_ID_79, whole genome shotgun sequence

⇒Summary: seq-len = 36010 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25079-35879 bp Zoom in on locus 1 x14 x24 CRISPR array Location: 25079-25887 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 25079-25887 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 26071-26634 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 26638-27666 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27677-28660 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28647-29951 bp Gene: COG1203:cas3 Type: Type-I Location: 30009-33239 bp Gene: cd09718:cas1 Type: universal Location: 33236-34210 bp CRISPR array Location: 34471-35879 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 34471-35879 bp Num of repeats: 24 Spacers: s14-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25079-25887 bp]: array | spacers
           [Locus range 34471-35879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAD01000245.1 Pseudomonas aeruginosa strain HUM-311-D2 PA2_A6_NODE_212_length_8232_cov_27.8411_ID_423, whole genome shotgun sequence

⇒Summary: seq-len = 8232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7533-8101 bp Zoom in on locus 1 x10 CRISPR array Location: 7533-8101 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 7533-8101 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7533-8101 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)