CRISPRone

CRISPRone report for GCA_003632045.1_ASM363204v1

♦ Seq 1: QZZJ01000097.1 Pseudomonas aeruginosa strain HUM-294 NODE_68_length_13281_cov_24.3318_ID_135, whole genome shotgun sequence

⇒Summary: seq-len = 13281 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135-11236 bp Zoom in on locus 1 x13 x30 CRISPR array Location: 135-885 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 135-885 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1145-2119 bp Gene: COG1203:cas3 Type: Type-I Location: 2116-5346 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5404-6708 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6695-7678 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7689-8717 bp Gene: cd09739:cas6f Type: other Location: 8721-9284 bp CRISPR array Location: 9467-11236 bp Num of repeats: 30 Spacers: s13-s41 CRISPR array Location: 9467-11236 bp Num of repeats: 30 Spacers: s13-s41 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 135-885 bp]: array | spacers
           [Locus range 9467-11236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZZJ01000130.1 Pseudomonas aeruginosa strain HUM-294 NODE_21_length_108669_cov_23.5577_ID_41, whole genome shotgun sequence

⇒Summary: seq-len = 108669 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 320-1429 bp Zoom in on locus 1 x19 CRISPR array Location: 320-1429 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 320-1429 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 320-1429 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)