CRISPRone

CRISPRone report for GCA_003632075.1_ASM363207v1

♦ Seq 1: QZZG01000179.1 Pseudomonas aeruginosa strain HUM-396 PA2_D9_NODE_69_length_24401_cov_26.2062_ID_137, whole genome shotgun sequence

⇒Summary: seq-len = 24401 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 823-11639 bp Zoom in on locus 1 x20 x7 CRISPR array Location: 823-2010 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 823-2010 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam09707:cas2 Type: universal Location: 2075-2374 bp Gene: COG1518:cas1 Type: universal Location: 2371-2820 bp Gene: COG1518:cas1 Type: universal Location: 2827-3261 bp Gene: pfam08798:cas6e Type: other Location: 3288-3827 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3874-4536 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4538-5680 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5690-6220 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 6217-7785 bp Gene: cd09641:cas3HD Type: Type-I Location: 7788-10469 bp CRISPR array Location: 11245-11639 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 11245-11639 bp Num of repeats: 7 Spacers: s20-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 823-2010 bp]: array | spacers
           [Locus range 11245-11639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)