CRISPRone

CRISPRone report for GCA_003632115.1_ASM363211v1

♦ Seq 1: QZZF01000305.1 Pseudomonas aeruginosa strain HUM-321-D2 PA2_A5_NODE_17_length_73891_cov_37.5675_ID_33, whole genome shotgun sequence

⇒Summary: seq-len = 73891 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42263-52848 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 42263-43132 bp Gene: pfam00078:RT Type: other Location: 48041-49309 bp Gene: unk Type: unknown Location: 49459-49857 bp Gene: unk Type: unknown Location: 50041-50220 bp Gene: cls000170:cas4 Type: Type-I Location: 51304-52848 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZZF01000060.1 Pseudomonas aeruginosa strain HUM-321-D2 PA2_A5_NODE_94_length_19472_cov_26.0024_ID_187, whole genome shotgun sequence

⇒Summary: seq-len = 19472 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16576-16971 bp Zoom in on locus 1 x7 CRISPR array Location: 16576-16971 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 16576-16971 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16576-16971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZZF01000011.1 Pseudomonas aeruginosa strain HUM-321-D2 PA2_A5_NODE_3_length_163498_cov_27.5807_ID_5, whole genome shotgun sequence

⇒Summary: seq-len = 163498 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 156850-163448 bp Zoom in on locus 1 x14 CRISPR array Location: 156850-157673 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 156850-157673 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 157738-158037 bp Gene: cd09719:cas1 Type: universal Location: 158034-158924 bp Gene: pfam08798:cas6e Type: other Location: 158951-159490 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 159537-160199 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 160201-161343 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 161353-161883 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 161880-163448 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 156850-157673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)