CRISPRone

CRISPRone report for GCA_003632215.1_ASM363221v1

♦ Seq 1: QZYU01000453.1 Pseudomonas aeruginosa strain HUM-343 NODE_234_length_3689_cov_5.26527_ID_467, whole genome shotgun sequence

⇒Summary: seq-len = 3689 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84-3688 bp Zoom in on locus 1 Gene: pfam09611:cas8f Type: Subtype-I-F Location: 84-1385 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1372-2355 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2366-3394 bp Gene: cd09739:cas6f Type: other Location: 3398-3688 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZYU01000308.1 Pseudomonas aeruginosa strain HUM-343 NODE_27_length_53117_cov_8.72732_ID_53, whole genome shotgun sequence

⇒Summary: seq-len = 53117 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52183-53113 bp Zoom in on locus 1 x16 CRISPR array Location: 52183-53113 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 52183-53113 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 52183-53113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZYU01000010.1 Pseudomonas aeruginosa strain HUM-343 NODE_683_length_215_cov_2.4875_ID_1365, whole genome shotgun sequence

⇒Summary: seq-len = 215 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32-180 bp Zoom in on locus 1 x3 CRISPR array Location: 32-180 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 32-180 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32-180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QZYU01000285.1 Pseudomonas aeruginosa strain HUM-343 NODE_99_length_22906_cov_8.85423_ID_201, whole genome shotgun sequence

⇒Summary: seq-len = 22906 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16893-22764 bp Zoom in on locus 1 x24 CRISPR array Location: 16893-18303 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 16893-18303 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 18563-19537 bp Gene: COG1203:cas3 Type: Type-I Location: 19534-22764 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16893-18303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QZYU01000063.1 Pseudomonas aeruginosa strain HUM-343 NODE_606_length_272_cov_2.09677_ID_1211, whole genome shotgun sequence

⇒Summary: seq-len = 272 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5-272 bp Zoom in on locus 1 x5 CRISPR array Location: 5-272 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5-272 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5-272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)