CRISPRone

CRISPRone report for GCA_003632635.1_ASM363263v1

♦ Seq 1: QZXK01000028.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_135_length_1102_cov_1.78732_ID_269, whole genome shotgun sequence

⇒Summary: seq-len = 1102 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1101 bp Zoom in on locus 1 Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3-128 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 139-1101 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZXK01000125.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_71_length_12094_cov_48.0038_ID_141, whole genome shotgun sequence

⇒Summary: seq-len = 12094 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11511-11898 bp Zoom in on locus 1 x7 CRISPR array Location: 11511-11898 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 11511-11898 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11511-11898 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZXK01000118.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_20_length_103410_cov_37.9471_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 103410 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45161-47363 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 45161-46132 bp Gene: unk Type: unknown Location: 46242-46928 bp Gene: cd09693:cas5 Type: Type-I Location: 46956-47363 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QZXK01000042.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_43_length_47846_cov_43.1518_ID_85, whole genome shotgun sequence

⇒Summary: seq-len = 47846 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272-539 bp Zoom in on locus 1 x5 CRISPR array Location: 272-539 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 272-539 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 272-539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QZXK01000134.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_9_length_163694_cov_39.9811_ID_17, whole genome shotgun sequence

⇒Summary: seq-len = 163694 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10250-20694 bp Zoom in on locus 1 x6 x15 CRISPR array Location: 10250-10584 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10250-10584 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09641:cas3HD Type: Type-I Location: 11371-14043 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 14046-15602 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 15599-16129 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 16139-17281 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 17284-17946 bp Gene: pfam08798:cas6e Type: other Location: 17921-18532 bp Gene: cd09719:cas1 Type: universal Location: 18559-19449 bp Gene: pfam09707:cas2 Type: universal Location: 19446-19745 bp CRISPR array Location: 19810-20694 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 19810-20694 bp Num of repeats: 15 Spacers: s6-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10250-10584 bp]: array | spacers
           [Locus range 19810-20694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)