CRISPRone

CRISPRone report for GCA_003632685.1_ASM363268v1

♦ Seq 1: QZXJ01000119.1 Pseudomonas aeruginosa strain ENV-550 NODE_44_length_48882_cov_31.415_ID_87, whole genome shotgun sequence

⇒Summary: seq-len = 48882 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38424-48744 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 38424-38992 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38424-38992 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 39234-39797 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39801-40829 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40840-41823 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41810-43114 bp Gene: COG1203:cas3 Type: Type-I Location: 43172-46402 bp Gene: cd09718:cas1 Type: universal Location: 46399-47373 bp CRISPR array Location: 47635-48744 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 47635-48744 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38424-38992 bp]: array | spacers
           [Locus range 47635-48744 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZXJ01000120.1 Pseudomonas aeruginosa strain ENV-550 NODE_28_length_85606_cov_31.8578_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 85552 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43877-46079 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 43877-44284 bp Gene: unk Type: unknown Location: 44312-44998 bp Gene: COG2378:WYL Type: other Location: 45108-46079 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZXJ01000167.1 Pseudomonas aeruginosa strain ENV-550 NODE_27_length_86687_cov_33.659_ID_53, whole genome shotgun sequence

⇒Summary: seq-len = 86687 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139-1428 bp Zoom in on locus 1 x22 CRISPR array Location: 139-1428 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 139-1428 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139-1428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QZXJ01000045.1 Pseudomonas aeruginosa strain ENV-550 NODE_45_length_48616_cov_36.4719_ID_89, whole genome shotgun sequence

⇒Summary: seq-len = 48616 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18482-28553 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 18482-21607 bp Gene: unk Type: unknown Location: 21659-21889 bp Gene: unk Type: unknown Location: 21871-22533 bp Gene: pfam13280:WYL Type: other Location: 22671-23546 bp Gene: unk Type: unknown Location: 23675-25426 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 25374-28553 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)