CRISPRone

CRISPRone report for GCA_003632755.1_ASM363275v1

♦ Seq 1: QZXE01000274.1 Pseudomonas aeruginosa strain VET-73 PA2_B9_NODE_35_length_35459_cov_27.3943_ID_69, whole genome shotgun sequence

⇒Summary: seq-len = 35459 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31578-33780 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 31578-31985 bp Gene: unk Type: unknown Location: 32013-32699 bp Gene: COG2378:WYL Type: other Location: 32809-33780 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZXE01000229.1 Pseudomonas aeruginosa strain VET-73 PA2_B9_NODE_17_length_49134_cov_34.9975_ID_33, whole genome shotgun sequence

⇒Summary: seq-len = 49134 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18793-28864 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 18793-21918 bp Gene: unk Type: unknown Location: 21970-22200 bp Gene: unk Type: unknown Location: 22182-22844 bp Gene: pfam13280:WYL Type: other Location: 22982-23857 bp Gene: unk Type: unknown Location: 23986-25737 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 25685-28864 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZXE01000235.1 Pseudomonas aeruginosa strain VET-73 PA2_B9_NODE_18_length_48469_cov_24.8266_ID_35, whole genome shotgun sequence

⇒Summary: seq-len = 48469 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38430-48331 bp Zoom in on locus 1 x8 x14 CRISPR array Location: 38430-38878 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 38430-38878 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 39120-39683 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39687-40715 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40726-41709 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41696-43000 bp Gene: COG1203:cas3 Type: Type-I Location: 43058-46288 bp Gene: cd09718:cas1 Type: universal Location: 46285-47259 bp CRISPR array Location: 47521-48331 bp Num of repeats: 14 Spacers: s8-s20 CRISPR array Location: 47521-48331 bp Num of repeats: 14 Spacers: s8-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38430-38878 bp]: array | spacers
           [Locus range 47521-48331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QZXE01000221.1 Pseudomonas aeruginosa strain VET-73 PA2_B9_NODE_447_length_2327_cov_25.1733_ID_893, whole genome shotgun sequence

⇒Summary: seq-len = 2327 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1675-2302 bp Zoom in on locus 1 x11 CRISPR array Location: 1675-2302 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1675-2302 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1675-2302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)