CRISPRone

CRISPRone report for GCA_003632765.1_ASM363276v1

♦ Seq 1: QZXC01000357.1 Pseudomonas aeruginosa strain VET-60 PA2_G4_NODE_73_length_21706_cov_20.9342_ID_145, whole genome shotgun sequence

⇒Summary: seq-len = 21706 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5042-15246 bp Zoom in on locus 1 x11 x17 CRISPR array Location: 5042-5671 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 5042-5671 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 5854-6417 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6421-7449 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7460-8443 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 8430-9734 bp Gene: COG1203:cas3 Type: Type-I Location: 9792-13022 bp Gene: cd09718:cas1 Type: universal Location: 13019-13993 bp CRISPR array Location: 14256-15246 bp Num of repeats: 17 Spacers: s11-s26 CRISPR array Location: 14256-15246 bp Num of repeats: 17 Spacers: s11-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5042-5671 bp]: array | spacers
           [Locus range 14256-15246 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZXC01000002.1 Pseudomonas aeruginosa strain VET-60 PA2_G4_NODE_300_length_6833_cov_23.8662_ID_599, whole genome shotgun sequence

⇒Summary: seq-len = 6833 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 286-1396 bp Zoom in on locus 1 x19 CRISPR array Location: 286-1396 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 286-1396 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 286-1396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZXC01000189.1 Pseudomonas aeruginosa strain VET-60 PA2_G4_NODE_151_length_13512_cov_20.1942_ID_301, whole genome shotgun sequence

⇒Summary: seq-len = 13512 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7246-9448 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 7246-7653 bp Gene: unk Type: unknown Location: 7681-8367 bp Gene: COG2378:WYL Type: other Location: 8477-9448 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)