CRISPRone

CRISPRone report for GCA_003632895.1_ASM363289v1

♦ Seq 1: RAAF01000188.1 Pseudomonas aeruginosa strain HUM-10 NODE_39_length_62759_cov_11.4403_ID_77, whole genome shotgun sequence

⇒Summary: seq-len = 62759 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-679 bp Zoom in on locus 1 x10 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAAF01000090.1 Pseudomonas aeruginosa strain HUM-10 NODE_47_length_48912_cov_10.3313_ID_93, whole genome shotgun sequence

⇒Summary: seq-len = 48912 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-10910 bp Zoom in on locus 1 x24 x14 CRISPR array Location: 110-1519 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 110-1519 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 1779-2753 bp Gene: COG1203:cas3 Type: Type-I Location: 2750-5980 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6038-7342 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7329-8312 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8323-9351 bp Gene: cd09739:cas6f Type: other Location: 9355-9918 bp CRISPR array Location: 10103-10910 bp Num of repeats: 14 Spacers: s24-s36 CRISPR array Location: 10103-10910 bp Num of repeats: 14 Spacers: s24-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110-1519 bp]: array | spacers
           [Locus range 10103-10910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)