CRISPRone

CRISPRone report for GCA_003633015.1_ASM363301v1

♦ Seq 1: QZZM01000491.1 Pseudomonas aeruginosa strain VET-56 PA2_C4_NODE_119_length_16455_cov_41.8547_ID_237, whole genome shotgun sequence

⇒Summary: seq-len = 16455 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 523-11186 bp Zoom in on locus 1 x15 x15 CRISPR array Location: 523-1392 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 523-1392 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 1649-2620 bp Gene: COG1203:cas3 Type: Type-I Location: 2617-5847 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6258-7559 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7546-8529 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8540-9568 bp Gene: cd09739:cas6f Type: other Location: 9572-10135 bp CRISPR array Location: 10319-11186 bp Num of repeats: 15 Spacers: s15-s28 CRISPR array Location: 10319-11186 bp Num of repeats: 15 Spacers: s15-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 523-1392 bp]: array | spacers
           [Locus range 10319-11186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZZM01000412.1 Pseudomonas aeruginosa strain VET-56 PA2_C4_NODE_86_length_22273_cov_41.6258_ID_171, whole genome shotgun sequence

⇒Summary: seq-len = 22273 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20925-21612 bp Zoom in on locus 1 x12 CRISPR array Location: 20925-21612 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 20925-21612 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20925-21612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)