CRISPRone

CRISPRone report for GCA_003633135.1_ASM363313v1

♦ Seq 1: QZZB01000032.1 Pseudomonas aeruginosa strain HUM-236 PA3_B2_NODE_78_length_23220_cov_42.6306_ID_155, whole genome shotgun sequence

⇒Summary: seq-len = 23220 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2820-3885 bp Zoom in on locus 1 x18 CRISPR array Location: 2820-3885 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2820-3885 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2820-3885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZZB01000066.1 Pseudomonas aeruginosa strain HUM-236 PA3_B2_NODE_108_length_11523_cov_35.8111_ID_215, whole genome shotgun sequence

⇒Summary: seq-len = 11523 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3294-10807 bp Zoom in on locus 1 x29 CRISPR array Location: 3294-5032 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 3294-5032 bp Num of repeats: 29 Spacers: s1-s28 Gene: pfam09707:cas2 Type: universal Location: 5097-5396 bp Gene: cd09719:cas1 Type: universal Location: 5393-6283 bp Gene: pfam08798:cas6e Type: other Location: 6310-6849 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 6896-7558 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 7560-8702 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 8712-9242 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 9239-10807 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3294-5032 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)