CRISPRone

CRISPRone report for GCA_003633175.1_ASM363317v1

♦ Seq 1: QZYY01000177.1 Pseudomonas aeruginosa strain HUM-256 PA3_B4_NODE_1_length_315886_cov_30.5344_ID_1, whole genome shotgun sequence

⇒Summary: seq-len = 315886 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64286-75836 bp Zoom in on locus 1 x17 x22 CRISPR array Location: 64286-65291 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 64286-65291 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09641:cas3HD Type: Type-I Location: 66065-68746 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 68749-70317 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 70314-70844 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 70854-71996 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 71998-72660 bp Gene: pfam08798:cas6e Type: other Location: 72635-73246 bp Gene: cd09719:cas1 Type: universal Location: 73273-74163 bp Gene: pfam09707:cas2 Type: universal Location: 74160-74459 bp CRISPR array Location: 74524-75836 bp Num of repeats: 22 Spacers: s17-s37 CRISPR array Location: 74524-75836 bp Num of repeats: 22 Spacers: s17-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64286-65291 bp]: array | spacers
           [Locus range 74524-75836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZYY01000181.1 Pseudomonas aeruginosa strain HUM-256 PA3_B4_NODE_28_length_77143_cov_27.1039_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 77143 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37901-48690 bp Zoom in on locus 1 x18 x20 CRISPR array Location: 37901-38949 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 37901-38949 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 39132-39695 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39699-40727 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40738-41721 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41708-43012 bp Gene: COG1203:cas3 Type: Type-I Location: 43070-46300 bp Gene: cd09718:cas1 Type: universal Location: 46297-47271 bp CRISPR array Location: 47523-48690 bp Num of repeats: 20 Spacers: s18-s36 CRISPR array Location: 47523-48690 bp Num of repeats: 20 Spacers: s18-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37901-38949 bp]: array | spacers
           [Locus range 47523-48690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)