CRISPRone

CRISPRone report for GCA_003633235.1_ASM363323v1

♦ Seq 1: QZYK01000182.1 Pseudomonas aeruginosa strain ENV-208 PA2_A2_NODE_262_length_8614_cov_6.36395_ID_523, whole genome shotgun sequence

⇒Summary: seq-len = 8614 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-8423 bp Zoom in on locus 1 x26 Gene: COG1203:cas3 Type: Type-I Location: 2-1192 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 1243-1917 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 1914-3677 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 3689-4558 bp Gene: pfam01930:cas4 Type: Type-I Location: 4577-5209 bp Gene: cd09721:cas1 Type: universal Location: 5213-6253 bp Gene: cd09725:cas2 Type: universal Location: 6263-6553 bp CRISPR array Location: 6735-8423 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 6735-8423 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6735-8423 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZYK01000645.1 Pseudomonas aeruginosa strain ENV-208 PA2_A2_NODE_27_length_37968_cov_17.468_ID_53, whole genome shotgun sequence

⇒Summary: seq-len = 37968 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5799-17144 bp Zoom in on locus 1 x23 x23 CRISPR array Location: 5799-7148 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 5799-7148 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 7397-7960 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7964-8992 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 9003-9986 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 9973-11277 bp Gene: COG1203:cas3 Type: Type-I Location: 11335-14565 bp Gene: cd09718:cas1 Type: universal Location: 14562-15536 bp CRISPR array Location: 15797-17144 bp Num of repeats: 23 Spacers: s23-s44 CRISPR array Location: 15797-17144 bp Num of repeats: 23 Spacers: s23-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5799-7148 bp]: array | spacers
           [Locus range 15797-17144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZYK01000635.1 Pseudomonas aeruginosa strain ENV-208 PA2_A2_NODE_716_length_1486_cov_9.01215_ID_1431, whole genome shotgun sequence

⇒Summary: seq-len = 1486 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295-983 bp Zoom in on locus 1 x12 CRISPR array Location: 295-983 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 295-983 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 295-983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QZYK01000370.1 Pseudomonas aeruginosa strain ENV-208 PA2_A2_NODE_10_length_48203_cov_20.8168_ID_19, whole genome shotgun sequence

⇒Summary: seq-len = 48203 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21322-34412 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 21322-21627 bp Gene: unk Type: unknown Location: 21674-22048 bp Gene: unk Type: unknown Location: 22163-22396 bp Gene: cd09641:cas3HD Type: Type-I Location: 22569-24428 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 34110-34412 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)