CRISPRone

CRISPRone report for GCA_003633465.1_ASM363346v1

♦ Seq 1: QZXN01000091.1 Pseudomonas aeruginosa strain VET-124 PA4_H4_NODE_43_length_47947_cov_24.8792_ID_85, whole genome shotgun sequence

⇒Summary: seq-len = 47947 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125-10480 bp Zoom in on locus 1 x5 x19 CRISPR array Location: 125-393 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 125-393 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 657-1631 bp Gene: COG1203:cas3 Type: Type-I Location: 1628-4858 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5495-6613 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6600-7583 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7594-8622 bp Gene: cd09739:cas6f Type: other Location: 8626-9189 bp CRISPR array Location: 9373-10480 bp Num of repeats: 19 Spacers: s5-s22 CRISPR array Location: 9373-10480 bp Num of repeats: 19 Spacers: s5-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125-393 bp]: array | spacers
           [Locus range 9373-10480 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZXN01000010.1 Pseudomonas aeruginosa strain VET-124 PA4_H4_NODE_36_length_67012_cov_28.5346_ID_71, whole genome shotgun sequence

⇒Summary: seq-len = 67012 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65801-66789 bp Zoom in on locus 1 x17 CRISPR array Location: 65801-66789 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 65801-66789 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65801-66789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZXN01000074.1 Pseudomonas aeruginosa strain VET-124 PA4_H4_NODE_31_length_80977_cov_24.2701_ID_61, whole genome shotgun sequence

⇒Summary: seq-len = 80977 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80706-80853 bp Zoom in on locus 1 x3 CRISPR array Location: 80706-80853 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 80706-80853 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80706-80853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QZXN01000065.1 Pseudomonas aeruginosa strain VET-124 PA4_H4_NODE_53_length_34309_cov_34.4553_ID_105, whole genome shotgun sequence

⇒Summary: seq-len = 34309 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4351-4618 bp Zoom in on locus 1 x5 CRISPR array Location: 4351-4618 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4351-4618 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4351-4618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)