CRISPRone

CRISPRone report for GCA_003633515.1_ASM363351v1

♦ Seq 1: QZXD01000159.1 Pseudomonas aeruginosa strain VET-58 PA2_E4_NODE_22_length_65098_cov_10.9109_ID_43, whole genome shotgun sequence

⇒Summary: seq-len = 65098 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55102-65095 bp Zoom in on locus 1 x29 CRISPR array Location: 55102-56813 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 55102-56813 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09739:cas6f Type: other Location: 57055-57618 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 57622-58650 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 58661-59644 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 59631-60935 bp Gene: COG1203:cas3 Type: Type-I Location: 60993-64223 bp Gene: COG1518:cas1 Type: universal Location: 64220-65095 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55102-56813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QZXD01000149.1 Pseudomonas aeruginosa strain VET-58 PA2_E4_NODE_72_length_28618_cov_12.3623_ID_143, whole genome shotgun sequence

⇒Summary: seq-len = 28618 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26982-28272 bp Zoom in on locus 1 x22 CRISPR array Location: 26982-28272 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 26982-28272 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26982-28272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QZXD01000168.1 Pseudomonas aeruginosa strain VET-58 PA2_E4_NODE_47_length_43015_cov_10.8826_ID_93, whole genome shotgun sequence

⇒Summary: seq-len = 43015 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22080-24282 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 22080-23051 bp Gene: unk Type: unknown Location: 23161-23847 bp Gene: cd09693:cas5 Type: Type-I Location: 23875-24282 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)