CRISPRone

CRISPRone report for GCA_003669855.1_ASM366985v1

♦ Seq 1: NRCA01000042.1 Pseudomonas aeruginosa strain Pa347 K57_S100_R1__paired__contig_42, whole genome shotgun sequence

⇒Summary: seq-len = 48484 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38475-48493 bp Zoom in on locus 1 x22 x3 CRISPR array Location: 38475-39762 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 38475-39762 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09739:cas6f Type: other Location: 39946-40509 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40513-41541 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41552-42535 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42522-43826 bp Gene: COG1203:cas3 Type: Type-I Location: 43884-47114 bp Gene: cd09718:cas1 Type: universal Location: 47111-48085 bp CRISPR array Location: 48346-48493 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 48346-48493 bp Num of repeats: 3 Spacers: s22-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38475-39762 bp]: array | spacers
           [Locus range 48346-48493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRCA01000066.1 Pseudomonas aeruginosa strain Pa347 K57_S100_R1__paired__contig_66, whole genome shotgun sequence

⇒Summary: seq-len = 21911 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-269 bp Zoom in on locus 1 x5 CRISPR array Location: 2-269 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2-269 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRCA01000004.1 Pseudomonas aeruginosa strain Pa347 K57_S100_R1__paired__contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 259658 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209001-210752 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 209001-209606 bp Gene: mkCas0131:cas8b5 Type: Subtype-I-B Location: 209736-210752 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)