CRISPRone

CRISPRone report for GCA_003669875.1_ASM366987v1

♦ Seq 1: NRBY01000080.1 Pseudomonas aeruginosa strain Pa1123 K32_S98_R1__paired__contig_80, whole genome shotgun sequence

⇒Summary: seq-len = 708 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-473 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 0-138 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-138 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 326-473 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 326-473 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-138 bp]: array | spacers
           [Locus range 326-473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBY01000106.1 Pseudomonas aeruginosa strain Pa1123 K32_S98_R1__paired__contig_106, whole genome shotgun sequence

⇒Summary: seq-len = 881 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-892 bp Zoom in on locus 1 x5 x9 CRISPR array Location: 0-258 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-258 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 385-892 bp Num of repeats: 9 Spacers: s5-s12 CRISPR array Location: 385-892 bp Num of repeats: 9 Spacers: s5-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-258 bp]: array | spacers
           [Locus range 385-892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRBY01000060.1 Pseudomonas aeruginosa strain Pa1123 K32_S98_R1__paired__contig_60, whole genome shotgun sequence

⇒Summary: seq-len = 47966 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 246-9734 bp Zoom in on locus 1 x20 Gene: cd09718:cas1 Type: universal Location: 246-1220 bp Gene: COG1203:cas3 Type: Type-I Location: 1217-4447 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4505-5809 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5796-6779 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6790-7818 bp Gene: cd09739:cas6f Type: other Location: 7822-8385 bp CRISPR array Location: 8570-9734 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 8570-9734 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8570-9734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRBY01000031.1 Pseudomonas aeruginosa strain Pa1123 K32_S98_R1__paired__contig_31, whole genome shotgun sequence

⇒Summary: seq-len = 63075 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-508 bp Zoom in on locus 1 x9 CRISPR array Location: 1-508 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1-508 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NRBY01000029.1 Pseudomonas aeruginosa strain Pa1123 K32_S98_R1__paired__contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 95894 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32986-41247 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32986-35352 bp Gene: unk Type: unknown Location: 35745-36392 bp Gene: unk Type: unknown Location: 36458-36826 bp Gene: COG2378:WYL Type: other Location: 36876-37718 bp Gene: pfam13280:WYL Type: other Location: 38460-39476 bp Gene: mkCas0115:csx3 Type: other Location: 39637-41247 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)