CRISPRone

CRISPRone report for GCA_003669905.1_ASM366990v1

♦ Seq 1: NRBX01000035.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 139423 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32983-41244 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32983-35349 bp Gene: unk Type: unknown Location: 35742-36389 bp Gene: unk Type: unknown Location: 36455-36742 bp Gene: COG2378:WYL Type: other Location: 36873-37715 bp Gene: pfam13280:WYL Type: other Location: 38457-39473 bp Gene: mkCas0115:csx3 Type: other Location: 39619-41244 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBX01000021.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 139780 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138422-139790 bp Zoom in on locus 1 x6 x14 CRISPR array Location: 138422-138750 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 138422-138750 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 138981-139790 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 138981-139790 bp Num of repeats: 14 Spacers: s6-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138422-138750 bp]: array | spacers
           [Locus range 138981-139790 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRBX01000067.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_67, whole genome shotgun sequence

⇒Summary: seq-len = 48231 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38362-48030 bp Zoom in on locus 1 x23 CRISPR array Location: 38362-39707 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38362-39707 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39891-40454 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40458-41486 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41497-42480 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42467-43771 bp Gene: COG1203:cas3 Type: Type-I Location: 43829-47059 bp Gene: cd09718:cas1 Type: universal Location: 47056-48030 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38362-39707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRBX01000026.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_26, whole genome shotgun sequence

⇒Summary: seq-len = 148138 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147581-148149 bp Zoom in on locus 1 x10 CRISPR array Location: 147581-148149 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 147581-148149 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147581-148149 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NRBX01000012.1 Pseudomonas aeruginosa strain Pa1810 K31_S97_R1__paired__contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 62534 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62278-62545 bp Zoom in on locus 1 x5 CRISPR array Location: 62278-62545 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 62278-62545 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62278-62545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)