CRISPRone

CRISPRone report for GCA_003669955.1_ASM366995v1

♦ Seq 1: NRBV01000028.1 Pseudomonas aeruginosa strain Pa2562 contig_0028, whole genome shotgun sequence

⇒Summary: seq-len = 95988 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54743-63004 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54743-56353 bp Gene: pfam13280:WYL Type: other Location: 56514-57530 bp Gene: COG2378:WYL Type: other Location: 58272-59114 bp Gene: unk Type: unknown Location: 59245-59532 bp Gene: unk Type: unknown Location: 59667-60245 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60638-63004 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBV01000032.1 Pseudomonas aeruginosa strain Pa2562 contig_0032, whole genome shotgun sequence

⇒Summary: seq-len = 63405 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-1120 bp Zoom in on locus 1 x17 CRISPR array Location: 132-1120 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 132-1120 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-1120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRBV01000035.1 Pseudomonas aeruginosa strain Pa2562 contig_0035, whole genome shotgun sequence

⇒Summary: seq-len = 50009 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-11830 bp Zoom in on locus 1 x30 x23 CRISPR array Location: 132-1901 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 132-1901 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09718:cas1 Type: universal Location: 2162-3136 bp Gene: COG1203:cas3 Type: Type-I Location: 3133-6363 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6421-7725 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7712-8695 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8706-9734 bp Gene: cd09739:cas6f Type: other Location: 9738-10301 bp CRISPR array Location: 10486-11830 bp Num of repeats: 23 Spacers: s30-s51 CRISPR array Location: 10486-11830 bp Num of repeats: 23 Spacers: s30-s51 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132-1901 bp]: array | spacers
           [Locus range 10486-11830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)