CRISPRone

CRISPRone report for GCA_003669975.1_ASM366997v1

♦ Seq 1: NRBU01000008.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 572833 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424266-425253 bp Zoom in on locus 1 x17 CRISPR array Location: 424266-425253 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 424266-425253 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424266-425253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBU01000006.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 283569 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154-9852 bp Zoom in on locus 1 x2 x20 Gene: cd09718:cas1 Type: universal Location: 154-1128 bp Gene: COG1203:cas3 Type: Type-I Location: 1125-4355 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4413-5717 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5704-6687 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6698-7726 bp Gene: cd09739:cas6f Type: other Location: 7730-8293 bp CRISPR array Location: 8478-8565 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8478-8565 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8688-9852 bp Num of repeats: 20 Spacers: s2-s20 CRISPR array Location: 8688-9852 bp Num of repeats: 20 Spacers: s2-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8478-8565 bp]: array | spacers
           [Locus range 8688-9852 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRBU01000037.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_37, whole genome shotgun sequence

⇒Summary: seq-len = 140247 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1749 bp Zoom in on locus 1 x8 x12 x5 CRISPR array Location: 0-437 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-437 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 567-1255 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 567-1255 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 1482-1749 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 1482-1749 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-437 bp]: array | spacers
           [Locus range 567-1255 bp]: array | spacers
           [Locus range 1482-1749 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRBU01000028.1 Pseudomonas aeruginosa strain Pa1060 K22_S95_R1__paired__contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 96014 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54773-63034 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54773-56383 bp Gene: pfam13280:WYL Type: other Location: 56544-57560 bp Gene: COG2378:WYL Type: other Location: 58302-59144 bp Gene: unk Type: unknown Location: 59275-59562 bp Gene: unk Type: unknown Location: 59697-60275 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60668-63034 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)