CRISPRone

CRISPRone report for GCA_003669995.1_ASM366999v1

♦ Seq 1: NRBS01000023.1 Pseudomonas aeruginosa strain Pa2568 K10_S93_R1__paired__contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 138476 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-79 bp Zoom in on locus 1 x2 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-79 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBS01000012.1 Pseudomonas aeruginosa strain Pa2568 K10_S93_R1__paired__contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 341717 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-11119 bp Zoom in on locus 1 x20 x3 x19 CRISPR array Location: 0-1160 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 0-1160 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 1421-2395 bp Gene: COG1203:cas3 Type: Type-I Location: 2392-5622 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5680-6984 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6971-7954 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7965-8993 bp Gene: cd09739:cas6f Type: other Location: 8997-9560 bp CRISPR array Location: 9745-9892 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 9745-9892 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 10015-11119 bp Num of repeats: 19 Spacers: s22-s39 CRISPR array Location: 10015-11119 bp Num of repeats: 19 Spacers: s22-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-1160 bp]: array | spacers
           [Locus range 9745-9892 bp]: array | spacers
           [Locus range 10015-11119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRBS01000019.1 Pseudomonas aeruginosa strain Pa2568 K10_S93_R1__paired__contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 139425 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32985-41246 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32985-35351 bp Gene: unk Type: unknown Location: 35744-36391 bp Gene: unk Type: unknown Location: 36457-36744 bp Gene: COG2378:WYL Type: other Location: 36875-37717 bp Gene: pfam13280:WYL Type: other Location: 38459-39475 bp Gene: mkCas0115:csx3 Type: other Location: 39621-41246 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRBS01000011.1 Pseudomonas aeruginosa strain Pa2568 K10_S93_R1__paired__contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 147892 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52-199 bp Zoom in on locus 1 x3 CRISPR array Location: 52-199 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 52-199 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 52-199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)