CRISPRone

CRISPRone report for GCA_003670015.1_ASM367001v1

♦ Seq 1: NRBQ01000013.1 Pseudomonas aeruginosa strain Pa1780 K4_S91_R1__paired__contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 8838 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140-8848 bp Zoom in on locus 1 x2 x3 Gene: cd09718:cas1 Type: universal Location: 140-1114 bp Gene: COG1203:cas3 Type: Type-I Location: 1111-4341 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4399-5703 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5690-6673 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6684-7712 bp Gene: cd09739:cas6f Type: other Location: 7716-8279 bp CRISPR array Location: 8464-8551 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8464-8551 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8701-8848 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 8701-8848 bp Num of repeats: 3 Spacers: s2-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8464-8551 bp]: array | spacers
           [Locus range 8701-8848 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBQ01000055.1 Pseudomonas aeruginosa strain Pa1780 K4_S91_R1__paired__contig_55, whole genome shotgun sequence

⇒Summary: seq-len = 39181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38124-39169 bp Zoom in on locus 1 x18 CRISPR array Location: 38124-39169 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38124-39169 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38124-39169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRBQ01000095.1 Pseudomonas aeruginosa strain Pa1780 K4_S91_R1__paired__contig_95, whole genome shotgun sequence

⇒Summary: seq-len = 1047 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 433-1057 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 433-580 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 433-580 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 850-1057 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 850-1057 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 433-580 bp]: array | spacers
           [Locus range 850-1057 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRBQ01000035.1 Pseudomonas aeruginosa strain Pa1780 K4_S91_R1__paired__contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 96005 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32983-41244 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32983-35349 bp Gene: unk Type: unknown Location: 35742-36389 bp Gene: unk Type: unknown Location: 36455-36823 bp Gene: COG2378:WYL Type: other Location: 36873-37715 bp Gene: pfam13280:WYL Type: other Location: 38457-39473 bp Gene: mkCas0115:csx3 Type: other Location: 39634-41244 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NRBQ01000092.1 Pseudomonas aeruginosa strain Pa1780 K4_S91_R1__paired__contig_92, whole genome shotgun sequence

⇒Summary: seq-len = 1390 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-894 bp Zoom in on locus 1 x4 x6 CRISPR array Location: 1-208 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-208 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 567-894 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 567-894 bp Num of repeats: 6 Spacers: s4-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-208 bp]: array | spacers
           [Locus range 567-894 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NRBQ01000033.1 Pseudomonas aeruginosa strain Pa1780 K4_S91_R1__paired__contig_33, whole genome shotgun sequence

⇒Summary: seq-len = 128464 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-858 bp Zoom in on locus 1 x15 CRISPR array Location: 0-858 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 0-858 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-858 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)