CRISPRone

CRISPRone report for GCA_003670025.1_ASM367002v1

♦ Seq 1: NRBR01000024.1 Pseudomonas aeruginosa strain Pa1014 K5_S92_R1__paired__contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 95894 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32986-41247 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32986-35352 bp Gene: unk Type: unknown Location: 35745-36392 bp Gene: unk Type: unknown Location: 36458-36826 bp Gene: COG2378:WYL Type: other Location: 36876-37718 bp Gene: pfam13280:WYL Type: other Location: 38460-39476 bp Gene: mkCas0115:csx3 Type: other Location: 39637-41247 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBR01000015.1 Pseudomonas aeruginosa strain Pa1014 K5_S92_R1__paired__contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 286082 bp; # of CRISPR array = 6; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 274033-285674 bp Zoom in on locus 1 x13 x9 x4 x5 x4 x6 CRISPR array Location: 274033-274782 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 274033-274782 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 274910-275414 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 274910-275414 bp Num of repeats: 9 Spacers: s13-s20 Gene: cd09739:cas6f Type: other Location: 275598-276161 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 276165-277193 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 277204-278187 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 278174-279478 bp Gene: COG1203:cas3 Type: Type-I Location: 279536-282766 bp Gene: cd09718:cas1 Type: universal Location: 282763-283737 bp CRISPR array Location: 283999-284206 bp Num of repeats: 4 Spacers: s21-s23 CRISPR array Location: 283999-284206 bp Num of repeats: 4 Spacers: s21-s23 CRISPR array Location: 284518-284785 bp Num of repeats: 5 Spacers: s24-s27 CRISPR array Location: 284518-284785 bp Num of repeats: 5 Spacers: s24-s27 CRISPR array Location: 284888-285095 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 284888-285095 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 285347-285674 bp Num of repeats: 6 Spacers: s31-s35 CRISPR array Location: 285347-285674 bp Num of repeats: 6 Spacers: s31-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 274033-274782 bp]: array | spacers
           [Locus range 274910-275414 bp]: array | spacers
           [Locus range 283999-284206 bp]: array | spacers
           [Locus range 284518-284785 bp]: array | spacers
           [Locus range 284888-285095 bp]: array | spacers
           [Locus range 285347-285674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)