CRISPRone

CRISPRone report for GCA_003670055.1_ASM367005v1

♦ Seq 1: NRBT01000087.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_87, whole genome shotgun sequence

⇒Summary: seq-len = 1850 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 453-1861 bp Zoom in on locus 1 x6 x3 x9 CRISPR array Location: 453-781 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 453-781 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 999-1147 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 999-1147 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 1352-1861 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 1352-1861 bp Num of repeats: 9 Spacers: s8-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 453-781 bp]: array | spacers
           [Locus range 999-1147 bp]: array | spacers
           [Locus range 1352-1861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBT01000012.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 55057 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54630-55018 bp Zoom in on locus 1 x7 CRISPR array Location: 54630-55018 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 54630-55018 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54630-55018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRBT01000025.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 95893 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54652-62913 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54652-56262 bp Gene: pfam13280:WYL Type: other Location: 56423-57439 bp Gene: COG2378:WYL Type: other Location: 58181-59023 bp Gene: unk Type: unknown Location: 59154-59441 bp Gene: unk Type: unknown Location: 59576-60154 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60547-62913 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRBT01000080.1 Pseudomonas aeruginosa strain Pa1175 K11_S94_R1__paired__contig_80, whole genome shotgun sequence

⇒Summary: seq-len = 9151 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-8951 bp Zoom in on locus 1 x7 x2 CRISPR array Location: 0-376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 540-628 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 540-628 bp Num of repeats: 2 Spacers: s7-s7 Gene: cd09739:cas6f Type: other Location: 812-1375 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1379-2407 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2418-3401 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3388-4692 bp Gene: COG1203:cas3 Type: Type-I Location: 4750-7980 bp Gene: cd09718:cas1 Type: universal Location: 7977-8951 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-376 bp]: array | spacers
           [Locus range 540-628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)