CRISPRone

CRISPRone report for GCA_003691345.1_ASM369134v1

♦ Seq 1: CP033084.1 Pseudomonas aeruginosa strain PA-3 chromosome, complete genome

⇒Summary: seq-len = 6327308 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 306378-317314 bp 2 Locus 2: 3008191-3008458 bp Zoom in on locus 1 x14 x3 x11 Zoom in on locus 2 x5 CRISPR array Location: 306378-307203 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 306378-307203 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 307975-308646 bp Gene: cd09639:cas3 Type: Type-I Location: 308738-309991 bp Gene: unk Type: unknown Location: 310010-310660 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 310663-312231 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 312228-312758 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 312768-313910 bp Gene: pfam08798:cas6e Type: other Location: 313912-315159 bp Gene: cd09719:cas1 Type: universal Location: 315186-316076 bp Gene: cd09755:cas2 Type: universal Location: 316234-316368 bp CRISPR array Location: 316431-316582 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 316431-316582 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 316676-317314 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 316676-317314 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 3008191-3008458 bp Num of repeats: 5 Spacers: s26-s29 CRISPR array Location: 3008191-3008458 bp Num of repeats: 5 Spacers: s26-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 306378-307203 bp]: array | spacers
           [Locus range 316431-316582 bp]: array | spacers
           [Locus range 316676-317314 bp]: array | spacers
           [Locus range 3008191-3008458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)