CRISPRone

CRISPRone report for GCA_003697205.1_ASM369720v1

♦ Seq 1: CP033213.1 Clostridioides difficile strain CD10010 chromosome, complete genome

⇒Summary: seq-len = 4049580 bp; # of CRISPR array = 6; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1319069-1319626 bp 2 Locus 2: 1802044-1803723 bp 3 Locus 3: 2129263-2140581 bp 4 Locus 4: 2178084-2178771 bp 5 Locus 5: 2286760-2297687 bp 6 Locus 6: 2585305-2596258 bp 7 Locus 7: 2648861-2657188 bp 8 Locus 8: 3223454-3235880 bp Zoom in on locus 1 x9 Zoom in on locus 2 x26 Zoom in on locus 3 x29 Zoom in on locus 4 x11 Zoom in on locus 5 x29 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x44 CRISPR array Location: 1319069-1319626 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1319069-1319626 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1802044-1803723 bp Num of repeats: 26 Spacers: s9-s33 CRISPR array Location: 1802044-1803723 bp Num of repeats: 26 Spacers: s9-s33 CRISPR array Location: 2129263-2131134 bp Num of repeats: 29 Spacers: s34-s61 CRISPR array Location: 2129263-2131134 bp Num of repeats: 29 Spacers: s34-s61 Gene: cd09718:cas1 Type: universal Location: 2138537-2140192 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2140204-2140581 bp CRISPR array Location: 2178084-2178771 bp Num of repeats: 11 Spacers: s62-s71 CRISPR array Location: 2178084-2178771 bp Num of repeats: 11 Spacers: s62-s71 Gene: cd09725:cas2 Type: universal Location: 2286760-2287050 bp Gene: cd09722:cas1 Type: universal Location: 2287261-2288268 bp Gene: pfam01930:cas4 Type: Type-I Location: 2288294-2288788 bp CRISPR array Location: 2288873-2290746 bp Num of repeats: 29 Spacers: s72-s99 CRISPR array Location: 2288873-2290746 bp Num of repeats: 29 Spacers: s72-s99 Gene: cd09641:cas3HD Type: Type-I Location: 2290936-2293494 bp Gene: cd09693:cas5 Type: Type-I Location: 2293518-2294258 bp Gene: pfam05107:cas7b Type: Type-I Location: 2294260-2295255 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2295304-2296980 bp Gene: cd09652:cas6 Type: other Location: 2296992-2297687 bp Gene: cd06127:DEDDh Type: Type-I Location: 2585305-2585811 bp Gene: unk Type: unknown Location: 2585970-2586638 bp Gene: unk Type: unknown Location: 2587051-2587557 bp Gene: cd06127:DEDDh Type: Type-I Location: 2587921-2588958 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2595773-2596258 bp Gene: cd09641:cas3HD Type: Type-I Location: 2648861-2651269 bp Gene: cd09693:cas5 Type: Type-I Location: 2651296-2652093 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2652109-2653122 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2653141-2654607 bp Gene: pfam01881:cas6 Type: other Location: 2654612-2655349 bp Gene: unk Type: unknown Location: 2655450-2655626 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2656079-2657188 bp CRISPR array Location: 3223454-3226303 bp Num of repeats: 44 Spacers: s100-s142 CRISPR array Location: 3223454-3226303 bp Num of repeats: 44 Spacers: s100-s142 Gene: cd09725:cas2 Type: universal Location: 3226487-3226753 bp Gene: cd09722:cas1 Type: universal Location: 3226756-3227736 bp Gene: pfam01930:cas4 Type: Type-I Location: 3227739-3228257 bp Gene: COG1203:cas3 Type: Type-I Location: 3228305-3230626 bp Gene: cd09693:cas5 Type: Type-I Location: 3230637-3231338 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3231340-3232254 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3232256-3234106 bp Gene: pfam01881:cas6 Type: other Location: 3234112-3234849 bp Gene: pfam13280:WYL Type: other Location: 3234927-3235880 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1319069-1319626 bp]: array | spacers
           [Locus range 1802044-1803723 bp]: array | spacers
           [Locus range 2129263-2131134 bp]: array | spacers
           [Locus range 2178084-2178771 bp]: array | spacers
           [Locus range 2288873-2290746 bp]: array | spacers
           [Locus range 3223454-3226303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)