CRISPRone

CRISPRone report for GCA_003697225.1_ASM369722v1

♦ Seq 1: CP033214.1 Clostridioides difficile strain 12038 chromosome, complete genome

⇒Summary: seq-len = 4066982 bp; # of CRISPR array = 6; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1336465-1337022 bp 2 Locus 2: 1819440-1821119 bp 3 Locus 3: 2146659-2157977 bp 4 Locus 4: 2195480-2196167 bp 5 Locus 5: 2304156-2315083 bp 6 Locus 6: 2602701-2613654 bp 7 Locus 7: 2666257-2674584 bp 8 Locus 8: 3240850-3253276 bp Zoom in on locus 1 x9 Zoom in on locus 2 x26 Zoom in on locus 3 x29 Zoom in on locus 4 x11 Zoom in on locus 5 x29 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x44 CRISPR array Location: 1336465-1337022 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1336465-1337022 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1819440-1821119 bp Num of repeats: 26 Spacers: s9-s33 CRISPR array Location: 1819440-1821119 bp Num of repeats: 26 Spacers: s9-s33 CRISPR array Location: 2146659-2148530 bp Num of repeats: 29 Spacers: s34-s61 CRISPR array Location: 2146659-2148530 bp Num of repeats: 29 Spacers: s34-s61 Gene: cd09718:cas1 Type: universal Location: 2155933-2157588 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2157600-2157977 bp CRISPR array Location: 2195480-2196167 bp Num of repeats: 11 Spacers: s62-s71 CRISPR array Location: 2195480-2196167 bp Num of repeats: 11 Spacers: s62-s71 Gene: cd09725:cas2 Type: universal Location: 2304156-2304446 bp Gene: cd09722:cas1 Type: universal Location: 2304657-2305664 bp Gene: pfam01930:cas4 Type: Type-I Location: 2305690-2306184 bp CRISPR array Location: 2306269-2308142 bp Num of repeats: 29 Spacers: s72-s99 CRISPR array Location: 2306269-2308142 bp Num of repeats: 29 Spacers: s72-s99 Gene: cd09641:cas3HD Type: Type-I Location: 2308332-2310890 bp Gene: cd09693:cas5 Type: Type-I Location: 2310914-2311654 bp Gene: pfam05107:cas7b Type: Type-I Location: 2311656-2312651 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2312700-2314376 bp Gene: cd09652:cas6 Type: other Location: 2314388-2315083 bp Gene: cd06127:DEDDh Type: Type-I Location: 2602701-2603207 bp Gene: unk Type: unknown Location: 2603366-2604034 bp Gene: unk Type: unknown Location: 2604447-2604953 bp Gene: cd06127:DEDDh Type: Type-I Location: 2605317-2606354 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2613169-2613654 bp Gene: cd09641:cas3HD Type: Type-I Location: 2666257-2668665 bp Gene: cd09693:cas5 Type: Type-I Location: 2668692-2669489 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2669505-2670518 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2670537-2672003 bp Gene: pfam01881:cas6 Type: other Location: 2672008-2672745 bp Gene: unk Type: unknown Location: 2672846-2673022 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2673475-2674584 bp CRISPR array Location: 3240850-3243699 bp Num of repeats: 44 Spacers: s100-s142 CRISPR array Location: 3240850-3243699 bp Num of repeats: 44 Spacers: s100-s142 Gene: cd09725:cas2 Type: universal Location: 3243883-3244149 bp Gene: cd09722:cas1 Type: universal Location: 3244152-3245132 bp Gene: pfam01930:cas4 Type: Type-I Location: 3245135-3245653 bp Gene: COG1203:cas3 Type: Type-I Location: 3245701-3248022 bp Gene: cd09693:cas5 Type: Type-I Location: 3248033-3248734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3248736-3249650 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3249652-3251502 bp Gene: pfam01881:cas6 Type: other Location: 3251508-3252245 bp Gene: pfam13280:WYL Type: other Location: 3252323-3253276 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1336465-1337022 bp]: array | spacers
           [Locus range 1819440-1821119 bp]: array | spacers
           [Locus range 2146659-2148530 bp]: array | spacers
           [Locus range 2195480-2196167 bp]: array | spacers
           [Locus range 2306269-2308142 bp]: array | spacers
           [Locus range 3240850-3243699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)