CRISPRone

CRISPRone report for GCA_003697245.1_ASM369724v1

♦ Seq 1: CP033216.1 Clostridioides difficile strain CD21062 chromosome, complete genome

⇒Summary: seq-len = 3996135 bp; # of CRISPR array = 5; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1714905-1716054 bp 2 Locus 2: 2041590-2053900 bp 3 Locus 3: 2109312-2110125 bp 4 Locus 4: 2218114-2229701 bp 5 Locus 5: 2517353-2528306 bp 6 Locus 6: 2580909-2589236 bp 7 Locus 7: 3155388-3167086 bp Zoom in on locus 1 x18 Zoom in on locus 2 x44 Zoom in on locus 3 x13 Zoom in on locus 4 x39 Zoom in on locus 5 Zoom in on locus 6 Zoom in on locus 7 x33 CRISPR array Location: 1714905-1716054 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1714905-1716054 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2041590-2044454 bp Num of repeats: 44 Spacers: s18-s60 CRISPR array Location: 2041590-2044454 bp Num of repeats: 44 Spacers: s18-s60 Gene: cd09718:cas1 Type: universal Location: 2051856-2053511 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2053523-2053900 bp CRISPR array Location: 2109312-2110125 bp Num of repeats: 13 Spacers: s61-s72 CRISPR array Location: 2109312-2110125 bp Num of repeats: 13 Spacers: s61-s72 Gene: cd09725:cas2 Type: universal Location: 2218114-2218404 bp Gene: cd09722:cas1 Type: universal Location: 2218615-2219622 bp Gene: pfam01930:cas4 Type: Type-I Location: 2219648-2220142 bp CRISPR array Location: 2220227-2222759 bp Num of repeats: 39 Spacers: s73-s110 CRISPR array Location: 2220227-2222759 bp Num of repeats: 39 Spacers: s73-s110 Gene: unk Type: unknown Location: 2220850-2220978 bp Gene: cd09641:cas3HD Type: Type-I Location: 2222949-2225507 bp Gene: cd09693:cas5 Type: Type-I Location: 2225531-2226271 bp Gene: pfam05107:cas7b Type: Type-I Location: 2226273-2227262 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2227255-2228994 bp Gene: cd09652:cas6 Type: other Location: 2229006-2229701 bp Gene: cd06127:DEDDh Type: Type-I Location: 2517353-2517859 bp Gene: unk Type: unknown Location: 2518018-2518686 bp Gene: unk Type: unknown Location: 2519099-2519605 bp Gene: cd06127:DEDDh Type: Type-I Location: 2519969-2521006 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2527821-2528306 bp Gene: cd09641:cas3HD Type: Type-I Location: 2580909-2583317 bp Gene: cd09693:cas5 Type: Type-I Location: 2583344-2584141 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2584157-2585170 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2585189-2586655 bp Gene: pfam01881:cas6 Type: other Location: 2586660-2587397 bp Gene: unk Type: unknown Location: 2587498-2587674 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2588127-2589236 bp CRISPR array Location: 3155388-3157509 bp Num of repeats: 33 Spacers: s111-s142 CRISPR array Location: 3155388-3157509 bp Num of repeats: 33 Spacers: s111-s142 Gene: cd09725:cas2 Type: universal Location: 3157693-3157959 bp Gene: cd09722:cas1 Type: universal Location: 3157962-3158942 bp Gene: pfam01930:cas4 Type: Type-I Location: 3158945-3159463 bp Gene: COG1203:cas3 Type: Type-I Location: 3159511-3161832 bp Gene: cd09693:cas5 Type: Type-I Location: 3161843-3162544 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3162546-3163460 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3163462-3165312 bp Gene: pfam01881:cas6 Type: other Location: 3165318-3166055 bp Gene: pfam13280:WYL Type: other Location: 3166133-3167086 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1714905-1716054 bp]: array | spacers
           [Locus range 2041590-2044454 bp]: array | spacers
           [Locus range 2109312-2110125 bp]: array | spacers
           [Locus range 2220227-2222759 bp]: array | spacers
           [Locus range 3155388-3157509 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)