CRISPRone

CRISPRone report for GCA_003698455.1_ASM369845v1

♦ Seq 1: MCMI01000005.1 Pseudomonas aeruginosa strain 6D92(H) isolate AMT0023-30 IPC1260_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 478937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415712-416340 bp Zoom in on locus 1 x11 CRISPR array Location: 415712-416340 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 415712-416340 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415712-416340 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MCMI01000019.1 Pseudomonas aeruginosa strain 6D92(H) isolate AMT0023-30 IPC1260_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 87566 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40019-49186 bp Zoom in on locus 1 x8 x3 CRISPR array Location: 40019-40467 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 40019-40467 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 40718-41692 bp Gene: COG1203:cas3 Type: Type-I Location: 41689-44919 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 44977-46281 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 46268-47251 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 47262-48290 bp Gene: cd09739:cas6f Type: other Location: 48294-48857 bp CRISPR array Location: 49040-49186 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 49040-49186 bp Num of repeats: 3 Spacers: s8-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40019-40467 bp]: array | spacers
           [Locus range 49040-49186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)