CRISPRone

CRISPRone report for GCA_003716765.1_ASM371676v1

♦ Seq 1: CP033439.1 Pseudomonas aeruginosa strain SP4528 chromosome, complete genome

⇒Summary: seq-len = 6877287 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132493-142354 bp 2 Locus 2: 3563216-3573525 bp 3 Locus 3: 5027673-5028120 bp Zoom in on locus 1 Zoom in on locus 2 x13 x17 Zoom in on locus 3 x8 Gene: mkCas0115:csx3 Type: other Location: 132493-134103 bp Gene: pfam13280:WYL Type: other Location: 134264-135280 bp Gene: unk Type: unknown Location: 136552-136731 bp Gene: unk Type: unknown Location: 137041-137574 bp Gene: pfam13280:WYL Type: other Location: 137589-138464 bp Gene: unk Type: unknown Location: 138595-138882 bp Gene: unk Type: unknown Location: 139017-139595 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 139988-142354 bp CRISPR array Location: 3563216-3563964 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3563216-3563964 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 3564215-3565189 bp Gene: COG1203:cas3 Type: Type-I Location: 3565186-3568416 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3568474-3569778 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3569765-3570748 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3570759-3571787 bp Gene: cd09739:cas6f Type: other Location: 3571791-3572354 bp CRISPR array Location: 3572538-3573525 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 3572538-3573525 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 5027673-5028120 bp Num of repeats: 8 Spacers: s29-s35 CRISPR array Location: 5027673-5028120 bp Num of repeats: 8 Spacers: s29-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3563216-3563964 bp]: array | spacers
           [Locus range 3572538-3573525 bp]: array | spacers
           [Locus range 5027673-5028120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)