CRISPRone

CRISPRone report for GCA_003833715.1_ASM383371v1

♦ Seq 1: NSNN01000003.1 Pseudomonas aeruginosa strain PA-W16 IPC1286_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 604427 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107631-109217 bp Zoom in on locus 1 x27 CRISPR array Location: 107631-109217 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 107631-109217 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107631-109217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSNN01000005.1 Pseudomonas aeruginosa strain PA-W16 IPC1286_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 483654 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 450385-461429 bp Zoom in on locus 1 x21 x21 CRISPR array Location: 450385-451613 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 450385-451613 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 451797-452360 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 452364-453392 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 453403-454386 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 454373-455677 bp Gene: COG1203:cas3 Type: Type-I Location: 455735-458965 bp Gene: cd09718:cas1 Type: universal Location: 458962-459936 bp CRISPR array Location: 460201-461429 bp Num of repeats: 21 Spacers: s21-s40 CRISPR array Location: 460201-461429 bp Num of repeats: 21 Spacers: s21-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 450385-451613 bp]: array | spacers
           [Locus range 460201-461429 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)