CRISPRone

CRISPRone report for GCA_003833805.1_ASM383380v1

♦ Seq 1: NSOC01000001.1 Pseudomonas aeruginosa strain JYH28 IPC1239_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1379781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 534514-535502 bp Zoom in on locus 1 x17 CRISPR array Location: 534514-535502 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 534514-535502 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 534514-535502 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSOC01000012.1 Pseudomonas aeruginosa strain JYH28 IPC1239_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 70359 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22269-31929 bp Zoom in on locus 1 x12 x7 CRISPR array Location: 22269-22957 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 22269-22957 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 23221-24195 bp Gene: COG1203:cas3 Type: Type-I Location: 24192-27422 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27480-28784 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28771-29754 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29765-30793 bp Gene: cd09739:cas6f Type: other Location: 30797-31360 bp CRISPR array Location: 31543-31929 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 31543-31929 bp Num of repeats: 7 Spacers: s12-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22269-22957 bp]: array | spacers
           [Locus range 31543-31929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)