CRISPRone

CRISPRone report for GCA_003834025.1_ASM383402v1

♦ Seq 1: NSNJ01000022.1 Pseudomonas aeruginosa strain PA-W28 IPC1290_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 67802 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37028-48247 bp Zoom in on locus 1 x19 x26 CRISPR array Location: 37028-38136 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37028-38136 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 38319-38882 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38886-39914 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39925-40908 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40895-42199 bp Gene: COG1203:cas3 Type: Type-I Location: 42257-45487 bp Gene: cd09718:cas1 Type: universal Location: 45484-46458 bp CRISPR array Location: 46720-48247 bp Num of repeats: 26 Spacers: s19-s43 CRISPR array Location: 46720-48247 bp Num of repeats: 26 Spacers: s19-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37028-38136 bp]: array | spacers
           [Locus range 46720-48247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSNJ01000018.1 Pseudomonas aeruginosa strain PA-W28 IPC1290_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 117043 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101905-108296 bp Zoom in on locus 1 x11 Gene: pfam03787:csm3gr7 Type: Type-III Location: 101905-103005 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 102993-103547 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 103561-105774 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 105774-106454 bp Gene: COG1518:cas1 Type: universal Location: 106459-107328 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 107309-107644 bp CRISPR array Location: 107668-108296 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 107668-108296 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 107668-108296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)