CRISPRone

CRISPRone report for GCA_003834395.1_ASM383439v1

♦ Seq 1: NSOG01000018.1 Pseudomonas aeruginosa strain JYH18 IPC1229_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 122598 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68831-81921 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 68831-69133 bp Gene: cd09641:cas3HD Type: Type-I Location: 78815-80674 bp Gene: unk Type: unknown Location: 80847-81080 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 81616-81921 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSOG01000002.1 Pseudomonas aeruginosa strain JYH18 IPC1229_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 566358 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 274610-285304 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 274610-275371 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 274610-275371 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 275436-275735 bp Gene: COG1518:cas1 Type: universal Location: 275732-276181 bp Gene: COG1518:cas1 Type: universal Location: 276188-276622 bp Gene: pfam08798:cas6e Type: other Location: 276649-277188 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 277235-277897 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 277899-279041 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 279051-279581 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 279578-281146 bp Gene: cd09641:cas3HD Type: Type-I Location: 281149-283830 bp CRISPR array Location: 284605-285304 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 284605-285304 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 274610-275371 bp]: array | spacers
           [Locus range 284605-285304 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)