CRISPRone

CRISPRone report for GCA_003835145.1_ASM383514v1

♦ Seq 1: NSQY01000027.1 Pseudomonas aeruginosa strain DUN-013 IPC1018_27.1, whole genome shotgun sequence

⇒Summary: seq-len = 37657 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 467-914 bp Zoom in on locus 1 x8 CRISPR array Location: 467-914 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 467-914 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 467-914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSQY01000032.1 Pseudomonas aeruginosa strain DUN-013 IPC1018_32.1, whole genome shotgun sequence

⇒Summary: seq-len = 12400 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1469-11315 bp Zoom in on locus 1 x19 x2 CRISPR array Location: 1469-2579 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1469-2579 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2839-3813 bp Gene: COG1203:cas3 Type: Type-I Location: 3810-7040 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7098-8402 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8389-9372 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9383-10411 bp Gene: cd09739:cas6f Type: other Location: 10415-10978 bp CRISPR array Location: 11228-11315 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 11228-11315 bp Num of repeats: 2 Spacers: s19-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1469-2579 bp]: array | spacers
           [Locus range 11228-11315 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSQY01000003.1 Pseudomonas aeruginosa strain DUN-013 IPC1018_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 644071 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 492863-494217 bp Zoom in on locus 1 x23 CRISPR array Location: 492863-494217 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 492863-494217 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 492863-494217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)