CRISPRone

CRISPRone report for GCA_003835165.1_ASM383516v1

♦ Seq 1: NSRE01000005.1 Pseudomonas aeruginosa strain DUN-004 IPC1001_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 402935 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 401963-402591 bp Zoom in on locus 1 x11 CRISPR array Location: 401963-402591 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 401963-402591 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 401963-402591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSRE01000032.1 Pseudomonas aeruginosa strain DUN-004 IPC1001_32.1, whole genome shotgun sequence

⇒Summary: seq-len = 30089 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29401-29728 bp Zoom in on locus 1 x6 CRISPR array Location: 29401-29728 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 29401-29728 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29401-29728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSRE01000006.1 Pseudomonas aeruginosa strain DUN-004 IPC1001_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 398443 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196840-198964 bp Zoom in on locus 1 x12 x2 CRISPR array Location: 196840-197527 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 196840-197527 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 198876-198964 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 198876-198964 bp Num of repeats: 2 Spacers: s12-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196840-197527 bp]: array | spacers
           [Locus range 198876-198964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NSRE01000009.1 Pseudomonas aeruginosa strain DUN-004 IPC1001_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 248995 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145265-145593 bp Zoom in on locus 1 x6 CRISPR array Location: 145265-145593 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 145265-145593 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 145265-145593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NSRE01000040.1 Pseudomonas aeruginosa strain DUN-004 IPC1001_40.1, whole genome shotgun sequence

⇒Summary: seq-len = 11329 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1218-10994 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 1218-1846 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1218-1846 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 2110-3084 bp Gene: COG1203:cas3 Type: Type-I Location: 3081-6311 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6726-8027 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8014-8997 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9008-10036 bp Gene: cd09739:cas6f Type: other Location: 10040-10603 bp CRISPR array Location: 10787-10994 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 10787-10994 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1218-1846 bp]: array | spacers
           [Locus range 10787-10994 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NSRE01000013.1 Pseudomonas aeruginosa strain DUN-004 IPC1001_13.1, whole genome shotgun sequence

⇒Summary: seq-len = 233432 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126959-127227 bp Zoom in on locus 1 x5 CRISPR array Location: 126959-127227 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 126959-127227 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 126959-127227 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)