CRISPRone

CRISPRone report for GCA_003835295.1_ASM383529v1

♦ Seq 1: NSRH01000016.1 Pseudomonas aeruginosa strain 001-6 IPC988_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 86390 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55257-66836 bp Zoom in on locus 1 x19 x32 CRISPR array Location: 55257-56365 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 55257-56365 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 56548-57111 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 57115-58143 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 58154-59137 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 59124-60428 bp Gene: COG1203:cas3 Type: Type-I Location: 60486-63716 bp Gene: cd09718:cas1 Type: universal Location: 63713-64687 bp CRISPR array Location: 64949-66836 bp Num of repeats: 32 Spacers: s19-s49 CRISPR array Location: 64949-66836 bp Num of repeats: 32 Spacers: s19-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55257-56365 bp]: array | spacers
           [Locus range 64949-66836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSRH01000009.1 Pseudomonas aeruginosa strain 001-6 IPC988_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 283300 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158115-158573 bp Zoom in on locus 1 x8 CRISPR array Location: 158115-158573 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 158115-158573 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 158115-158573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)