CRISPRone

CRISPRone report for GCA_003835325.1_ASM383532v1

♦ Seq 1: NSRI01000014.1 Pseudomonas aeruginosa strain 001-5B IPC987_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 117898 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86452-98331 bp Zoom in on locus 1 x19 x37 CRISPR array Location: 86452-87560 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 86452-87560 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 87743-88306 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 88310-89338 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 89349-90332 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 90319-91623 bp Gene: COG1203:cas3 Type: Type-I Location: 91681-94911 bp Gene: cd09718:cas1 Type: universal Location: 94908-95882 bp CRISPR array Location: 96144-98331 bp Num of repeats: 37 Spacers: s19-s54 CRISPR array Location: 96144-98331 bp Num of repeats: 37 Spacers: s19-s54 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 86452-87560 bp]: array | spacers
           [Locus range 96144-98331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSRI01000009.1 Pseudomonas aeruginosa strain 001-5B IPC987_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 283356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158115-158573 bp Zoom in on locus 1 x8 CRISPR array Location: 158115-158573 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 158115-158573 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 158115-158573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)