CRISPRone

CRISPRone report for GCA_003835445.1_ASM383544v1

♦ Seq 1: NSPO01000005.1 Pseudomonas aeruginosa strain A1(A2448) IPC1122_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 337038 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92501-92948 bp Zoom in on locus 1 x8 CRISPR array Location: 92501-92948 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 92501-92948 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92501-92948 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSPO01000018.1 Pseudomonas aeruginosa strain A1(A2448) IPC1122_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 171264 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63164-74103 bp Zoom in on locus 1 x16 x13 CRISPR array Location: 63164-64107 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63164-64107 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 64172-64471 bp Gene: cd09719:cas1 Type: universal Location: 64582-65358 bp Gene: pfam08798:cas6e Type: other Location: 65385-65924 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 65971-66633 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 66635-67777 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 67787-68317 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 68314-69882 bp Gene: cd09641:cas3HD Type: Type-I Location: 69885-72566 bp CRISPR array Location: 73342-74103 bp Num of repeats: 13 Spacers: s16-s27 CRISPR array Location: 73342-74103 bp Num of repeats: 13 Spacers: s16-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63164-64107 bp]: array | spacers
           [Locus range 73342-74103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)