CRISPRone

CRISPRone report for GCA_003835685.1_ASM383568v1

♦ Seq 1: NSQX01000002.1 Pseudomonas aeruginosa strain 014-2A IPC1020_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 883951 bp; # of CRISPR array = 2; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 572079-583153 bp 2 Locus 2: 836407-838609 bp Zoom in on locus 1 x8 x17 Zoom in on locus 2 CRISPR array Location: 572079-572536 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 572079-572536 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 573323-576022 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 576383-577939 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 577936-578466 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 578476-579618 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 579621-580283 bp Gene: pfam08798:cas6e Type: other Location: 580258-580869 bp Gene: cd09719:cas1 Type: universal Location: 580896-581786 bp Gene: pfam09707:cas2 Type: universal Location: 581783-582082 bp CRISPR array Location: 582147-583153 bp Num of repeats: 17 Spacers: s8-s23 CRISPR array Location: 582147-583153 bp Num of repeats: 17 Spacers: s8-s23 Gene: cd09693:cas5 Type: Type-I Location: 836407-836814 bp Gene: unk Type: unknown Location: 836842-837528 bp Gene: COG2378:WYL Type: other Location: 837638-838609 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 572079-572536 bp]: array | spacers
           [Locus range 582147-583153 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)