CRISPRone

CRISPRone report for GCA_003835765.1_ASM383576v1

♦ Seq 1: NSRC01000004.1 Pseudomonas aeruginosa strain DUN-007-2 IPC1006_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 599814 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 598735-599303 bp Zoom in on locus 1 x10 CRISPR array Location: 598735-599303 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 598735-599303 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 598735-599303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSRC01000005.1 Pseudomonas aeruginosa strain DUN-007-2 IPC1006_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 441784 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 418598-427338 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 418598-420964 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 421891-423111 bp Gene: unk Type: unknown Location: 423672-425810 bp Gene: unk Type: unknown Location: 425985-426128 bp Gene: pfam13280:WYL Type: other Location: 426469-427338 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSRC01000021.1 Pseudomonas aeruginosa strain DUN-007-2 IPC1006_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 48804 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38394-48452 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 38394-38961 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38394-38961 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 39144-39707 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39711-40739 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40750-41733 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41720-43021 bp Gene: COG1203:cas3 Type: Type-I Location: 43432-46662 bp Gene: cd09718:cas1 Type: universal Location: 46659-47633 bp CRISPR array Location: 47885-48452 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 47885-48452 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38394-38961 bp]: array | spacers
           [Locus range 47885-48452 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)